Publications

Guertler, P., Brandl, C., Meyer, H. H. D., Tichopad, A. Feeding genetically modified maize (MON810) to dairy cows: comparison of gene expression pattern of markers for apoptosis, inflammation and cell cycle. Journal fur Verbraucherschutz und Lebensmittelsicherheit-Journal of Consumer Protection and Food Safety, 7(3):195-202, 2012. ISSN 1661-5751.

Butenko, O., Dzamba, D., Benesova, J., Honsa, P., Benfenati, V., Rusnakova, V., Ferroni, S., Anderova, M. The Increased Activity of TRPV4 Channel in the Astrocytes of the Adult Rat Hippocampus after Cerebral Hypoxia/Ischemia. PLoS ONE, 7(6): e39959, 2012. ISSN 1932-6203.

Brevik, A., Lindeman, B., Rusnakova, V., Olsen, A. K., Brunborg, G., Duale, N. Paternal benzo[a]pyrene exposure affects gene expression in the early developing mouse embryo. Toxicological Sciences, 129(1), 2012. ISSN 1096-6080.

Kubista, M., Rusnakova, V., Svec, D., Sjogreen, B., Tichopad, A. Genex: Data Analysis Software. Quantitative Real-Time PCR in Applied Microbiology, 63-84, 2012. ISBN 978-1-908230-01-0.

Kubista, M. Drivers and Hurdles for qPCR. Genetic Engineering & Biotechnology News, 32(9): 24, 2012. ISSN 1935-472X.

Pazzagli, M., Malentacchi, F., Simi, L., Orlando, C., Wyrich, R., Gunther, K., Hartmann, C., Verderio, P., Pizzamiglio, S., Ciniselli, C. M., Tichopad, A., Kubista, M., Gelmini, S. Evidence-based quality guidelines for pre-analytical phase of blood samples. Clinical Chemistry and Laboratory Medicine, 49(1): 128, 2011. ISSN 1434-6621.

Brevik, A., Rusnakova, V., Duale, N., Slagsvold, H. H., Olsen, A.-K., Storeng, R., Kubista, M., Brunborg, G., Lindeman, B. Preconceptional paternal glycidamide exposure affects embryonic gene expression: Single embryo gene expression study following in vitro fertilization. Reproductive Toxicology, 32: 463-471, 2011. ISSN 0890-6238.

Bustin, A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl , M. W., Shipley, G. L., Vandesompele, J., Wittwer, C. T. Primer Sequence Disclosure: A Clarification of the MIQE Guideline. Clinical Chemistry, 57: 919-921, 2011. ISSN 0009-9147.

Stahlberg, A., Kubista, M., Aman, P. Single-cell gene-expression profiling and its potential diagnostic application. Expert Review of Molecular Diagnostics, 11: 735-740, 2011. ISSN 1473-7159.

Kubista, M., Stahlberg, A. DNA diagnostics get digitased. Drug Discovery World, 2011.

Kubista, M., Tichopad, A. qPCR Round Table. International Drug Discovery 2011.

Gruber, H., Paul, V., Guertler, P., Spiekers, H., Tichopad, A., Meyer, H. H. D., Muller M. Fate of Cry1Ab Protein in Agricultural Systems under Slurry Management of Cows Fed Genetically Modified Maize (Zea mays L.) MON810: A Quantitative Assessment. J Agric Food Chem 2011.

Kubista, M., Rusnakova, V., Svec, D., Stahlberg, A. High throughput single cell expression profiling: Taking a closer look on biological response. Clinical Chemistry and Laboratory Medicine, 49(1): 118, 2011. ISSN 1434-6621.

Kubista, M., Strombom, L., Svec, D., Rusnakova, V., Stahlberg, A. High throughput single cell expression profiling: Taking a closer look on biological response. European Pharmaceutical Review, 16(2): 20-24, 2011.

Mikulova, V., Cabinakova, M., Pobudova, J., Tesarova, P., Pavlista, D., Kolostova, K., Kubista, M., Romzova, M., Zima, T. The role of disseminated tumor cells and circulating tumor cells in management of breast cancer patients. Tumor Biology, 31(1): 73, 2010. ISSN 1010-428.

Bergkvist, A., Rusnakova, V., Sindelka, R., Garda, J. M. A., Sjogreen, B., Lindh, D., Forootan, A., Kubista, M. Gene expression profiling – Clusters of possibilities. Methods, 50: 323-335, 2010. ISSN 1046-2023.

Bohuslavova, R., Kolar, F., Kuthanova, L., Neckar, J., Tichopad, A., Pavlinkova, G. Gene expression profiling of sex differences in HIF1-dependent adaptive cardiac responses to chronic hypoxia. Journal of Applied Physiology, 109: 1195-1202, 2010. ISSN 8750-7587.

Coll, A., Nadal, A., Collado, R., Capellades, G., Kubista, M., Messeguer, J., Pla, M. Natural variation explains most transcriptomic changes among maize plants of MON810 and comparable non-GM varieties subjected to two N-fertilization farming practice. Plant Molecular Biology, 73: 349-362, 2010. ISSN 0167-4412.

Kitchen, R. R., Kubista, M., Tichopad, A. Statistical aspects of quantitative real-time PCR experiment design. Methods, 50: 231-236, 2010. ISSN 1046-2023.

Kozubenko, N., Turnovcova, K., Kapcalova, M., Butenko, O., Anderova, M., Rusnakova, V., Kubista, M., Hampl, A., Jendelova, P., Sykova, E. Analysis of In Vitro and In Vivo Characteristics of Human Embryonic Stem Cell-Derived Neural Precursor. Cell Transplantation, 19: 471-486, 2010. ISSN 0963-6897.

Sindelka, R., Sidova, M., Svec, D., Kubista, M. Spatial expression profiles in the Xenopus laevis oocytes measured with qPCR tomography. Methods, 51: 87-91, 2010. ISSN 1046-2023.

Tichopad, A., Bar, T., Pecen, L., Kitchen, R. R., Kubista, M., Pfaffl , M. W. Quality control for quantitative PCR based on amplification compatibility test. Methods, 50: 308-312, 2010. ISSN 1046-2023.

Zanvit, P., Tichopad, A., Havlickova, M., Novotna, O., Jirkovska, M., Kolostova, K., Cechova, D., Julak, J., Sterzl, I., Prokesova, L.Adjuvant effect of Bacillus firmus on the expression of cytokines and toll-like receptors in mouse nasopharynx-associated lymphoid tissue (NALT) after intranasal immunization with inactivated influenza virus type A. Immunology Letters, 134: 26-34, 2010. ISSN 0165-2478.

Veiga, M. I., Ferreira, P. E., Schmidt, B. A., Ribacke, U., Bjorkman, A., Tichopad, A., Gil, J. P. Antimalarial Exposure Delays Plasmodium falciparum Intra-Erythrocytic Cycle and Drives Drug Transporter Genes Expression. PLoS ONE, 5(8): e12408, 2010. ISSN 1932-6203.

Stahlberg, A., Andersson, D., Aurelius, J., Faiz, M., Pekna, M., Kubista, M., Pekny, M., Defining cell populations with single-cell gene expression profiling: correlations and identification of astrocyte subpopulations. Nucleic Acids Research, 39(4): 1-12, 2010. ISSN 0305-1048.

Kolostova, K., Pinterova, D., Tesarova, P., Bobek, V., Mikulova, V., Kubecova, M., Brychta, M., Rusnakova, V., Bauer, S. K., Kubista, M. Gene expression profiling in circulation cells (CTCS) of breast carcinoma patients. Annals of Oncology, 21(4): 49-50, 2010.

Stofkova, A., Zelezna, B., Romzova, M., Ulicna, O., Kiss, A., Skurlova, M., Jurcovicova, J. Effect of feeding status on adjuvant arthritis severity, cachexia, and insulin sensitivity in male Lewis rats. Mediators of Inflammation, Article No.: 398026, 2010. ISSN 0962-9351.

Kubista, M. Real-time PCR: Where we are and where are we heading. Drug Discovery World Spring 2010.

Ctrnacta, V., Fritzler, J. M., Surinova, M., Hrdy, I., Zhu, G., Stejskal, F. Efficacy of S-adenosylhomocysteine hydrolase inhibitors, D-eritadenine and (S)-DHPA, against the growth of Cryptosporidium parvum in vitro. Experimental Parasitology, 126(2): 113-116, 2010. ISSN:0014-4894.

Bustin, A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M., Mueller, R., Nolan, T., Pfaffl , M. V., Shipley, G. L., Vandesompele, J., Wittver, C. T. The MIQE Guidelines: Minimum Information for Publication of Quantitative Real-Time PCR. Experiment Clinical Chemistry, 55: 611-622, 2009. ISSN 0009-9147.